Read the header section from a profile HMM into a list.

Usage

read_hmm_header(file)

Arguments

file: Path to profile HMM (*.hmm)

Value

A base::list().

Examples

read_hmm_header(padlocdev_example("padloc-db/hmm/PDLC00150.hmm"))
#> $header
#> $header$`HMMER3/f`
#> [1] "[3.3 | Nov 2019]"
#> 
#> $header$NAME
#> [1] "HamA1_00001"
#> 
#> $header$LENG
#> [1] "310"
#> 
#> $header$ALPH
#> [1] "amino"
#> 
#> $header$ACC
#> [1] "PDLC00150"
#> 
#> $header$DESC
#> [1] "DUF1837"
#> 
#> $header$MAXL
#> integer(0)
#> 
#> $header$RF
#> [1] "no"
#> 
#> $header$MM
#> [1] "no"
#> 
#> $header$CONS
#> [1] "yes"
#> 
#> $header$CS
#> [1] "no"
#> 
#> $header$MAP
#> [1] "yes"
#> 
#> $header$DATE
#> [1] "Thu Jan  7 16:34:27 2021"
#> 
#> $header$COM
#> integer(0)
#> 
#> $header$NSEQ
#> [1] "49"
#> 
#> $header$EFFN
#> [1] "1.187317"
#> 
#> $header$CKSUM
#> [1] "1833952886"
#> 
#> $header$GA
#> integer(0)
#> 
#> $header$TC
#> integer(0)
#> 
#> $header$NC
#> integer(0)
#> 
#> $header$`STATS LOCAL MSV`
#> [1] "-10.8865  0.70101"
#> 
#> $header$`STATS LOCAL VITERBI`
#> [1] "-11.9205  0.70101"
#> 
#> $header$`STATS LOCAL FORWARD`
#> [1] "-5.4252  0.70101"
#> 
#>