Collapse HMM metadata table multi-name assignments

Collapse HMM metadata table multi-name assignments.

Usage

collapse_hmm_meta(hmm_meta_expanded)

Arguments

hmm_meta_expanded

An expanded HMM metadata table (as read-in by read_hmm_meta()) and expanded by expand_hmm_meta().

Value

An HMM metadata table with collasped name assignments.

Examples

path <- padlocdev_example("padloc-db/hmm_meta.txt")
hmm_meta <- read_hmm_meta(path)
hmm_meta_expanded <- expand_hmm_meta(hmm_meta)
hmm_meta_collapsed <- collapse_hmm_meta(hmm_meta_expanded)
hmm_meta_collapsed
#> # A tibble: 43 × 15
#>    hmm.acc   hmm.name    hmm.description   protein.name secondary.name author  
#>    <chr>     <chr>       <chr>             <chr>        <chr>          <chr>   
#>  1 PDLC00150 HamA1_00001 DUF1837 domain    HamA1|HamA   NA             Payne LJ
#>  2 PDLC00151 HamA1_00002 DUF1837 domain    HamA1|HamA   NA             Payne LJ
#>  3 PDLC00174 HamB1_00001 DEAD-box helicase HamB1|HamB   NA             Payne LJ
#>  4 PDLC00175 HamB1_00002 DEAD-box helicase HamB1|HamB   NA             Payne LJ
#>  5 PDLC00195 HamA2_00001 DUF1837 domain    HamA2|HamA   NA             Payne LJ
#>  6 PDLC00196 HamA2_00002 DUF1837 domain    HamA2|HamA   NA             Payne LJ
#>  7 PDLC00199 HamB2_00001 DEAD-box helicase HamB2|HamB   NA             Payne LJ
#>  8 PDLC00200 HamB2_00002 DEAD-box helicase HamB2|HamB   NA             Payne LJ
#>  9 PDLC00202 HamC2_00001 DUF3223 domain    HamC2|HamC   NA             Payne LJ
#> 10 PDLC00203 HamC2_00002 DUF3223 domain    HamC2|HamC   NA             Payne LJ
#> # ℹ 33 more rows
#> # ℹ 9 more variables: number.seq <dbl>, length.hmm <dbl>,
#> #   e.value.threshold <dbl>, hmm.coverage.threshold <dbl>,
#> #   target.coverage.threshold <dbl>, system <chr>, literature.ref <chr>,
#> #   database.ref <chr>, comments <chr>